Basic Information
Locus ID:
Oco24G009340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 14409115 | 14414962 | + | Oco24G009340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 124,031.56 Da | 50.10 | 75.18 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 95 | 190 | 5.30598E-49 | - |
| CDD | cd13999 | STKc_MAP3K-like | 851 | 1108 | 3.72909E-112 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 847 | 1108 | 1.5E-63 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 108 | 192 | 5.2E-20 | IPR000270 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 107 | 199 | 6.45E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 834 | 1107 | 1.15E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 933 | 1123 | 2.6E-53 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 110 | 194 | 1.3E-14 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 838 | 932 | 4.2E-26 | - |
| SMART | SM00220 | serkin_6 | 845 | 1111 | 5.8E-55 | IPR000719 |
| SMART | SM00666 | PB1_new | 106 | 193 | 4.2E-32 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 845 | 1111 | 41.050095 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 851 | 876 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 970 | 982 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 964 | 982 | 1.4E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1079 | 1101 | 1.4E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1035 | 1057 | 1.4E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 927 | 940 | 1.4E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 331 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04700.1 | PB1 domain-containing protein tyrosine kinase. | 0 |
| RefSeq | XP_006664159.1 | uncharacterized protein LOC102712766 [Oryza brachyantha] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | J3NEN0 | Protein kinase domain-containing protein OS=Oryza brachyantha OX=4533 GN=102712766 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology