Basic Information
Locus ID:
Oco24G008410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 13353321 | 13366918 | - | Oco24G008410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 75,702.80 Da | 49.01 | 96.07 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 275 | 317 | 2.3631E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 480 | 517 | 1.4E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 438 | 476 | 7.3E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 397 | 435 | 1.9E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 271 | 341 | 1.6E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 346 | 7.54E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 366 | 651 | 9.72E-50 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 21 | 137 | 3.0E-5 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 366 | 483 | 2.3E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 344 | 6.2E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 484 | 653 | 1.0E-22 | IPR011989 |
| SMART | SM00185 | arm_5 | 560 | 600 | 510.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 274 | 337 | 3.0E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 519 | 559 | 66.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 437 | 477 | 0.0048 | IPR000225 |
| SMART | SM00185 | arm_5 | 478 | 518 | 3.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 396 | 436 | 1.3E-5 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 407 | 449 | 12.6174 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 270 | 344 | 43.398769 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 692 | - | - |
| Coils | Coil | Coil | 143 | 163 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_052138872.1 | protein spotted leaf 11 isoform X1 [Oryza glaberrima] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1BHY0 | RING-type E3 ubiquitin transferase (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002326 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology