Basic Information
Locus ID:
Oco24G008060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 13017981 | 13024954 | + | Oco24G008060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 84,496.43 Da | 53.89 | 70.93 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 121 | 223 | 5.56814E-14 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 490 | 736 | 2.26805E-131 | - |
| Pfam | PF00989 | PAS fold | 113 | 222 | 3.0E-13 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 485 | 735 | 2.4E-68 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 456 | 734 | 2.26E-85 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 117 | 219 | 1.92E-18 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 123 | 227 | 3.8E-22 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 477 | 561 | 6.7E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 562 | 763 | 4.2E-64 | - |
| SMART | SM00091 | pas_2 | 112 | 179 | 4.7E-9 | IPR000014 |
| SMART | SM00220 | serkin_6 | 484 | 743 | 2.8E-59 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 111 | 223 | 9.3E-13 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 484 | 739 | 44.45639 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 110 | 181 | 17.700418 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 603 | 615 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 644 | 654 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 597 | 615 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 558 | 571 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 707 | 729 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 663 | 685 | 4.1E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 64 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_040385358.1 | probable serine/threonine-protein kinase SIS8 [Oryza brachyantha] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BJG1 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002278 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology