Basic Information
Locus ID:
Oco24G007990
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 12956022 | 12959138 | - | Oco24G007990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 58,962.10 Da | 72.26 | 53.40 | -1.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 395 | 477 | 9.4E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 493 | 524 | 2.2E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 395 | 477 | 4.8E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 429 | 452 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_006664638.1 | eukaryotic translation initiation factor 5B [Oryza brachyantha] | 0 |
| TrEMBL | A0A6G1BIF5 | PAPA-1 domain-containing protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_003963 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology