Basic Information
Locus ID:
Oco24G007700
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 12640456 | 12645407 | + | Oco24G007700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.31 | 70,982.07 Da | 40.66 | 113.82 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 257 | 279 | 1.9 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 466 | 486 | 0.29 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 233 | 254 | 0.75 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 335 | 357 | 0.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 412 | 435 | 0.068 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 181 | 203 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 207 | 229 | 1.0 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 168 | 606 | 1.52E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 17 | 204 | 1.9E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 205 | 435 | 4.3E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 436 | 657 | 3.3E-39 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 130 | 155 | 88.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 231 | 8.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 515 | 539 | 230.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 463 | 488 | 1.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 181 | 206 | 3.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 387 | 412 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 257 | 282 | 0.26 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 361 | 386 | 20.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 74 | 99 | 9.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 156 | 180 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 540 | 565 | 8.5E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 413 | 437 | 0.0016 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 232 | 256 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 566 | 590 | 31.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 438 | 462 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 489 | 514 | 0.0022 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 335 | 360 | 0.0029 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27920.1 | F-box family protein. | 0 |
| RefSeq | XP_052139065.1 | F-box/LRR-repeat protein 3 [Oryza glaberrima] | 0 |
| TrEMBL | A0A0E0MNE1 | F-box/LRR-repeat protein 3 OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1418, jg16690, jg21205, jg3211 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14544, gene_5979 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005710, Ah031358 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g158000, BVRB_7g175510 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg2264, Sbi_jg26871, Sbi_jg33702, Sbi_jg33703 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2491, Seu_jg8392 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00003029, GOSA_00005995, GOSA_00015377 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl24439, Sgl29614, Sgl70996, Sgl73103, Sgl74546, Sgl74587 ... |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006019, gene:ENSEOMG00000007524 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.2BG0010670, CQ.Regalona.r1.2BG0010680 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30268050 |
| Apiaceae | Apium graveolens | 3 | Ag10G00968, Ag2G01147, Ag7G01578 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G002030, COCNU_04G003940, COCNU_12G002630 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719773 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2146.V1.1, AsparagusV1_Unassigned.77.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G31147 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G01720.1, AT5G27920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003812m.g.v1.0, Thhalv10012898m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g21020.v2.2, Sp6g40980.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g078910.2N, BniB05g066790.2N, BniB07g038770.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G1150, Ceq08G0943, Ceq08G1797 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl06G1200, Cgl08G0962, Cgl08G1858 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g01680, gene.Cymno18g01150 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g02460, gene.Thate02g08970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8246 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.930, evm.TU.LG03.2495 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006957, Pov_00007221 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06640 |
| Poaceae | Echinochloa crus-galli | 11 | AH04.2116, AH04.44, AH05.3708, AH05.66, BH04.2199, BH04.53 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_5AG0378810, gene-QOZ80_5AG0393420 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0444540.1, HORVU.MOREX.r3.5HG0465190.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_001914, gene-QYE76_003718 |
| Poaceae | Oryza coarctata | 3 | Oco23G008100, Oco24G007700, Ocoptg000061lG000380 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g01780.1, LOC_Os12g01760.1, LOC_Os12g36670.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G007700, gene-BS78_05G231300 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0204318, Pt_Chr0702857, Pt_Chr0703813, Pt_Chr0705238 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr03G008220, Chr03G022770, Chr04G016790, Chr06G017460 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G180000, Tel5E01G261200 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2BG022870, gene_TRIDC4BG003160 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G091800.2, TraesCS5A02G150800.2 ... |
| Poaceae | Zea mays | 7 | Zm00001eb068870_P001, Zm00001eb094050_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25830, nbis-gene-30302, nbis-gene-46015 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g19121, Zma_g24607, Zma_g25171, Zma_g25953 |
| Portulacaceae | Portulaca oleracea | 13 | evm.TU.LG01.1167, evm.TU.LG01.500, evm.TU.LG03.1134 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g09140, gene.Posoc07g11900 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1880, evm.TU.Scaffold_1_RagTag.94 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-4628, nbisL1-mrna-5643, nbisL1-mrna-8182 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2107, nbisL1-mrna-5156 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3650, nbisL1-mrna-5179, nbisL1-mrna-9623 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.982, evm.TU.utg000012l.68 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00006080, Maker00011035, Maker00016912 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2651, nbisL1-mrna-4914, nbisL1-mrna-7890 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13814, nbisL1-mrna-16652, nbisL1-mrna-84 |
| Salicaceae | Populus euphratica | 6 | populus_peu11481, populus_peu13333, populus_peu15661 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606760, gene-LOC132645993 |
| Solanaceae | Solanum chilense | 2 | SOLCI000857800, SOLCI004699000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007469, gene-LOC107032076 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_18136, gene_5713, gene_6639 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G0853, TC02G2398, TC07G1061 |
| Zosteraceae | Zostera marina | 1 | Zosma01g17700.v3.1 |