Basic Information
Locus ID:
Oco24G007430
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 12272930 | 12276971 | + | Oco24G007430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 30,165.08 Da | 44.28 | 55.64 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 5 | 81 | 4.9E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 183 | 240 | 2.4E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 135 | 178 | 1.2E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 72 | 129 | 2.35E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 185 | 2.59E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 3 | 70 | 9.68E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 188 | 6.2E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 206 | 248 | 2.7E-18 | - |
| SMART | SM00184 | ring_2 | 136 | 178 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 179 | 11.677863 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 71 | 135 | 33.704063 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 69 | 25.424377 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 264 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_015618332.1 | E3 ubiquitin-protein ligase MIEL1 [Oryza sativa Japonica Group] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BMB5 | RING finger and CHY zinc finger domain-containing protein 1 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_019386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology