Basic Information
Locus ID:
Oco24G006310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 10908461 | 10927286 | + | Oco24G006310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 131,126.88 Da | 45.08 | 77.90 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 56 | 179 | 4.16915E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 197 | 525 | 6.53564E-167 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 886 | 1096 | 1.9E-54 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 624 | 876 | 4.3E-76 | IPR024729 |
| Pfam | PF00917 | MATH domain | 61 | 181 | 4.2E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 199 | 520 | 5.7E-47 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 52 | 187 | 5.07E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 194 | 550 | 9.42E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 802 | 899 | 3.9E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 684 | 801 | 1.3E-45 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 524 | 6.8E-90 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 195 | 8.1E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 56 | 160 | 3.7E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 54 | 179 | 38.008331 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 523 | 40.274933 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 200 | 215 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 439 | 456 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| Coils | Coil | Coil | 539 | 559 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015620101.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1BNX5 | ubiquitinyl hydrolase 1 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_028669 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology