Basic Information
Locus ID:
Oco24G005240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 8067603 | 8067948 | + | Oco24G005240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.91 | 11,610.26 Da | 50.68 | 73.72 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 92 | 1.68E-9 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 102 | 3.3E-11 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66750.1 | CDK-activating kinase 4. | 0 |
| RefSeq | XP_040385782.1 | putative cyclin-dependent kinase F-2 [Oryza brachyantha] | 0 |
| Q00534 | Cyclin-dependent kinase 6 OS=Homo sapiens OX=9606 GN=CDK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BKI3 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_005638 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.3320, BH05.3342, CH05.3446 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0388610, gene-QOZ80_5BG0435650 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0084710.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023515 |
| Poaceae | Oryza coarctata | 6 | Oco23G005350, Oco23G005420, Oco23G005910, Oco24G005190 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os12g23940.1, LOC_Os12g23950.1, LOC_Os12g24140.1 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G627300, Tel3E01G055300, Tel3E01G055400 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG047000, gene_TRIDC1AG055740 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS1A02G315100.1.cds1, TraesCS1B02G327000.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21376, nbis-gene-40118 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10509 |