Basic Information
Locus ID:
Oco24G004450
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 5707848 | 5713695 | - | Oco24G004450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 68,035.88 Da | 54.76 | 99.78 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02947 | TRX_family | 493 | 590 | 3.4063E-22 | - |
| Pfam | PF00085 | Thioredoxin | 487 | 590 | 7.2E-18 | IPR013766 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 475 | 594 | 5.03E-24 | IPR036249 |
| SUPERFAMILY | SSF52058 | L domain-like | 88 | 376 | 5.1E-15 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 473 | 595 | 7.7E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 109 | 414 | 9.8E-13 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 3 | 100 | 1.7E-12 | IPR036388 |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 459 | 594 | 10.330957 | IPR013766 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11530.1 | C-terminal cysteine residue is changed to a serine 1. Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. | 0 |
| RefSeq | XP_052137951.1 | disease resistance protein RGA5-like [Oryza glaberrima] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0P0Y947 | Os12g0281300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0281300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology