halophFGD

Basic Information

Locus ID: Oco24G004440

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: negative regulation of Rho guanyl-nucleotide exchange factor activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG24	5674168	5675651	-	Oco24G004440

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.85	31,536.30 Da	32.31	75.60	-0.73

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	42	86	2.3E-5	IPR036875
MobiDBLite	mobidb-lite	consensus disorder prediction	203	225	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	175	193	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	174	193	-	-
Coils	Coil	Coil	218	238	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015693950.1	uncharacterized protein LOC107304414 [Oryza brachyantha]	0
TrEMBL	A0A0E0KFP4	CCHC-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	38	AH01.2411, AH01.4053, AH02.2969, AH03.2983, AH03.3482 ... AH04.2168, AH06.1173, AH08.999, AH09.537, BH03.2058, BH04.426, BH05.3451, BH05.741, BH08.1003, CH01.3769, CH01.5060, CH02.2241, CH02.2449, CH03.1722, CH03.3505, CH03.4729, CH03.8, CH04.1398, CH04.2284, CH04.622, CH05.1139, CH05.2408, CH05.2903, CH05.3274, CH05.4118, CH06.1882, CH08.2427, CH08.2782, CH08.766, CH09.130, CH09.3180, CH09.404, CH09.641
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0033440.1.CDS1 ... HORVU.MOREX.r3.4HG0412720.1.CDS1, HORVU.MOREX.r3.5HG0425570.1.CDS1, HORVU.MOREX.r3.7HG0667800.1.CDS1
Poaceae	Lolium multiflorum	11	gene-QYE76_001489, gene-QYE76_002749, gene-QYE76_005337 ... gene-QYE76_006069, gene-QYE76_015759, gene-QYE76_026176, gene-QYE76_026545, gene-QYE76_034785, gene-QYE76_039367, gene-QYE76_066465, gene-QYE76_067977
Poaceae	Oryza coarctata	11	Oco01G004580, Oco02G011290, Oco04G017380, Oco06G018880 ... Oco07G011460, Oco09G008340, Oco11G000620, Oco13G002610, Oco16G007020, Oco22G009350, Oco24G004440
Poaceae	Oryza sativa	2	LOC_Os04g10890.1, LOC_Os04g47030.1
Poaceae	Paspalum vaginatum	21	gene-BS78_01G375300, gene-BS78_02G114900, gene-BS78_K171700 ... gene-BS78_03G065900, gene-BS78_03G158000, gene-BS78_04G086200, gene-BS78_04G324700, gene-BS78_05G028000, gene-BS78_05G093400, gene-BS78_05G171000, gene-BS78_05G212100, gene-BS78_07G089300, gene-BS78_07G152400, gene-BS78_08G164700, gene-BS78_09G111900, gene-BS78_10G109100, gene-BS78_10G157000, gene-BS78_K215100, gene-BS78_K261200, gene-BS78_K284800, gene-BS78_K333900
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0100538, Pt_Chr0103384, Pt_Chr0200373, Pt_Chr0305788 ... Pt_Chr0504634, Pt_Chr0505848, Pt_Chr0602815, Pt_Chr0604111
Poaceae	Sporobolus alterniflorus	104	Chr01G021880, Chr01G022060, Chr02G016330, Chr02G017390 ... Chr02G020590, Chr02G025200, Chr03G003810, Chr03G006920, Chr03G008040, Chr03G012410, Chr03G013380, Chr04G009130, Chr04G015410, Chr05G007550, Chr05G021150, Chr05G024850, Chr05G030530, Chr06G000770, Chr06G019070, Chr06G019080, Chr06G023450, Chr06G024050, Chr06G025660, Chr06G031580, Chr07G008660, Chr07G016630, Chr07G018320, Chr07G018470, Chr07G023170, Chr08G013330, Chr08G018100, Chr09G007850, Chr09G011380, Chr0G006060, Chr10G013700, Chr10G020240, Chr11G016410, Chr11G018670, Chr11G018680, Chr12G015200, Chr12G026390, Chr12G033140, Chr13G004490, Chr13G014980, Chr13G018070, Chr14G006840, Chr14G007730, Chr14G009620, Chr15G007310, Chr15G016590, Chr15G018160, Chr16G002280, Chr16G003750, Chr16G012450, Chr16G013450, Chr17G005410, Chr17G006200, Chr17G014260, Chr18G004510, Chr18G007630, Chr20G004680, Chr20G005800, Chr20G006250, Chr20G009020, Chr21G011550, Chr21G012860, Chr22G003720, Chr22G003730, Chr22G011380, Chr22G011930, Chr22G012430, Chr23G015670, Chr23G017930, Chr23G019440, Chr24G005360, Chr24G007250, Chr24G008440, Chr25G009660, Chr25G014270, Chr25G014330, Chr25G015030, Chr26G003910, Chr27G001640, Chr27G001650, Chr27G001920, Chr27G003410, Chr27G007890, Chr28G006730, Chr28G009700, Chr29G006940, Chr29G011740, Chr29G011750, Chr30G010560, Chr30G011210, Chr30G015190, Chr30G015840, Chr30G015850, Chr31G002250, Chr31G002260, Chr31G003120, Chr31G003160, Chr31G004970, Chr31G005210, Chr31G006250
Poaceae	Triticum aestivum	2	TraesCS1D02G347600.1.cds1, TraesCS3A02G333800.1
Poaceae	Zea mays	29	Zm00001eb029240_P001, Zm00001eb050450_P001 ... Zm00001eb054780_P001, Zm00001eb059440_P001, Zm00001eb087850_P001, Zm00001eb091020_P001, Zm00001eb099660_P001, Zm00001eb107790_P001, Zm00001eb112050_P001, Zm00001eb112190_P002, Zm00001eb118380_P001, Zm00001eb118390_P001, Zm00001eb131610_P001, Zm00001eb133620_P001, Zm00001eb158410_P001, Zm00001eb195810_P002, Zm00001eb235030_P001, Zm00001eb235540_P001, Zm00001eb250840_P001, Zm00001eb261750_P001, Zm00001eb261780_P001, Zm00001eb292070_P001, Zm00001eb311130_P001, Zm00001eb324580_P001, Zm00001eb356800_P001, Zm00001eb357400_P001, Zm00001eb388420_P001, Zm00001eb408840_P001, Zm00001eb416460_P001