Basic Information
Locus ID:
Oco24G003060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Translocase of chloroplast 159/132, membrane anchor domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 2989038 | 2992809 | + | Oco24G003060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 86,135.22 Da | 39.10 | 84.32 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01853 | Toc34_like | 133 | 381 | 2.93274E-118 | - |
| Pfam | PF04548 | AIG1 family | 164 | 302 | 6.2E-22 | IPR006703 |
| Pfam | PF11886 | Translocase of chloroplast 159/132, membrane anchor domain | 505 | 768 | 1.3E-115 | IPR024283 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 159 | 298 | 6.53E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 148 | 388 | 3.2E-51 | IPR027417 |
| TIGRFAM | TIGR00993 | 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains | 63 | 768 | 4.5E-200 | IPR005690 |
| ProSiteProfiles | PS51720 | AIG1-type G domain profile. | 161 | 391 | 29.00403 | IPR006703 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 76 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20300.1 | Avirulence induced gene (AIG1) family protein. | 0 |
| RefSeq | XP_015698666.1 | translocase of chloroplast 90, chloroplastic [Oryza brachyantha] | 0 |
| Q6S5G3 | Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BLG3 | AIG1-type G domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016063 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology