Basic Information
Locus ID:
Oco24G002580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 2370748 | 2382191 | - | Oco24G002580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 185,786.78 Da | 50.56 | 75.83 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08771 | DLP_1 | 54 | 349 | 7.58517E-56 | IPR001401 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1224 | 1255 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1371 | 1407 | 0.0059 | IPR001680 |
| Pfam | PF00350 | Dynamin family | 49 | 238 | 1.0E-29 | IPR045063 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1332 | 1365 | 4.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1508 | 1541 | 0.27 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1217 | 1548 | 1.83E-53 | IPR036322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 25 | 357 | 4.9E-36 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 1152 | 1276 | 1.7E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1320 | 1581 | 1.3E-46 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 24 | 401 | 3.5E-59 | IPR027417 |
| SMART | SM00320 | WD40_4 | 1464 | 1500 | 2.8 | IPR001680 |
| SMART | SM00053 | dynamin_3 | 18 | 255 | 1.1E-5 | IPR001401 |
| SMART | SM00320 | WD40_4 | 1409 | 1448 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1217 | 1256 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1368 | 1407 | 7.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1327 | 1365 | 3.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1501 | 1542 | 0.16 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1374 | 1408 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1374 | 1408 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1334 | 1374 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1224 | 1257 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1224 | 1257 | 11.523771 | - |
| ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 43 | 349 | 49.319748 | IPR030381 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1334 | 1365 | 10.943775 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1243 | 1257 | 1.4E-5 | IPR020472 |
| PRINTS | PR00195 | Dynamin signature | 46 | 64 | 6.6E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 71 | 88 | 6.6E-12 | IPR022812 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1352 | 1366 | 1.4E-5 | IPR020472 |
| PRINTS | PR00195 | Dynamin signature | 227 | 243 | 6.6E-12 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 156 | 173 | 6.6E-12 | IPR022812 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1394 | 1408 | 1.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1010 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1638 | 1659 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1055 | 1071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1638 | 1654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1284 | 1303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1167 | 1207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1034 | 1088 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1167 | 1205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1281 | 1312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1148 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 736 | 780 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19720.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFPARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. | 0 |
| RefSeq | XP_040385377.1 | uncharacterized protein LOC102718788 [Oryza brachyantha] | 0 |
| Q84N64 | Dynamin-like protein ARC5 OS=Arabidopsis thaliana OX=3702 GN=ARC5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0MKA8 | Dynamin-type G domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9459 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190220 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25278, Sbi_jg9132 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19462 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011215 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43036, Sgl43037, Sgl43045, Sgl47857 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010628, gene:ENSEOMG00000011620 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013190, CQ.Regalona.r1.8BG0014500 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30278880 |
| Apiaceae | Apium graveolens | 1 | Ag6G02800 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G003070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701354 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.657.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G09233 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G19720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020106m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g17760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g051030.2N, BniB07g051060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0697 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0751 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1158 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039866 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31980 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.346, BH05.401, CH05.458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383680, gene-QOZ80_5BG0430500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0455830.1 |
| Poaceae | Oryza coarctata | 1 | Oco24G002580 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g07880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G049900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703341 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G012900, Chr27G003000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G219600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG018760, gene_TRIDC5BG020980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G114600.1, TraesCS5B02G120600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb408290_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25513, nbis-gene-25514 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24832 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1552, evm.TU.LG22.445 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g02200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1579 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3664, nbisL1-mrna-3672 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15247 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18967 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.365 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2795 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21832 |
| Salicaceae | Populus euphratica | 3 | populus_peu04756, populus_peu12903, populus_peu12913 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606401 |
| Solanaceae | Solanum chilense | 1 | SOLCI002599800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002452 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9093 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0738 |