Basic Information
Locus ID:
Oco24G000010
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 7924 | 10508 | + | Oco24G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 55,888.65 Da | 62.04 | 69.39 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 319 | 363 | 6.01422E-20 | - |
| Pfam | PF13639 | Ring finger domain | 319 | 360 | 2.0E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 366 | 9.94E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 367 | 2.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 319 | 359 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 360 | 12.282736 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01980.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052138932.1 | uncharacterized protein LOC127757465 [Oryza glaberrima] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1E1L2 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025178 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3140 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20446 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2101, Sbi_jg34412 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2668 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005825 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71158, Sgl74740 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008045, gene:ENSEOMG00000036869 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0023420, CQ.Regalona.r1.7BG0026090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30269630 |
| Apiaceae | Apium graveolens | 1 | Ag10G01013 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G004910 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716699 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.402.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G18167, Ftri9G30037 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015834m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g004630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0855 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0873 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11880 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g29530, gene.Thate06g06260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11940, nbisL1-mrna-4866 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.826 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006999 |
| Poaceae | Echinochloa crus-galli | 2 | BH04.105, BH05.51 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672710, gene-QOZ80_9BG0696330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464020.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003526 |
| Poaceae | Oryza coarctata | 5 | Oco22G000660, Oco22G000680, Oco24G000010 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os11g02670.1, LOC_Os12g02620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G017200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107798, Pt_Chr0702912 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G021070, Chr06G022690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G255500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG024420, gene_TRIDC5BG025620 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G145800.1.cds1, TraesCS5B02G144700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb195510_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18351 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.218, evm.TU.LG15.746 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1285 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3930, nbisL1-mrna-3951 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17311 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18734 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.160 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006009 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21739 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23206 |
| Salicaceae | Populus euphratica | 2 | populus_peu11544, populus_peu25219 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631251 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114074001 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4353, gene_6601 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0929 |