Basic Information
Locus ID:
Oco23G011250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 17171105 | 17173278 | + | Oco23G011250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 33,230.59 Da | 47.00 | 76.18 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 99 | 143 | 5.82166E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 100 | 146 | 2.0E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 148 | 1.75E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 155 | 1.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 101 | 141 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 101 | 142 | 13.344952 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 116 | 125 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 191 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006664238.1 | E3 ubiquitin-protein ligase RNF5-like [Oryza brachyantha] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DQK8 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_028979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology