Basic Information
Locus ID:
Oco23G010350
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Amino acid permease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 16284655 | 16287092 | - | Oco23G010350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 63,156.87 Da | 27.61 | 106.54 | 0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13906 | C-terminus of AA_permease | 515 | 565 | 2.2E-18 | IPR029485 |
| Pfam | PF13520 | Amino acid permease | 75 | 468 | 1.8E-42 | IPR002293 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 70 | 507 | 5.1E-97 | - |
| PIRSF | PIRSF006060 | AA_transporter | 460 | 583 | 670.0 | - |
| PIRSF | PIRSF006060 | AA_transporter | 61 | 507 | 3.5E-68 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21120.1 | amino acid transporter 1. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. | 0 |
| RefSeq | XP_040385410.1 | cationic amino acid transporter 1-like isoform X4 [Oryza brachyantha] | 0 |
| Q84MA5 | Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MPI8 | AA_permease_C domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology