Basic Information
Locus ID:
Oco23G010110
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
HMT3
Description:
betaine-homocysteine S-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 16036589 | 16040096 | + | Oco23G010110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 36,796.18 Da | 35.23 | 90.73 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 29 | 327 | 2.5E-77 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 26 | 332 | 6.93E-85 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 19 | 328 | 1.4E-104 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 279 | 340 | 0.26 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 18 | 237 | 3.3E-6 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 17 | 329 | 48.321056 | IPR003726 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_006664177.1 | homocysteine S-methyltransferase 3 [Oryza brachyantha] | 0 |
| Q9FUM9 | Homocysteine S-methyltransferase 2 OS=Zea mays OX=4577 GN=HMT-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BNM4 | Hcy-binding domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023657 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology