Basic Information
Locus ID:
Oco23G009610
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 15360347 | 15365979 | + | Oco23G009610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 123,252.20 Da | 48.12 | 73.20 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 95 | 190 | 3.45663E-47 | - |
| CDD | cd13999 | STKc_MAP3K-like | 843 | 1100 | 1.12669E-110 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 839 | 1100 | 1.5E-63 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 108 | 191 | 4.4E-19 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 826 | 1099 | 4.59E-76 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 107 | 199 | 2.38E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 925 | 1116 | 6.7E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 110 | 194 | 1.4E-14 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 830 | 924 | 3.2E-26 | - |
| SMART | SM00666 | PB1_new | 106 | 191 | 9.3E-30 | IPR000270 |
| SMART | SM00220 | serkin_6 | 837 | 1107 | 9.2E-54 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 837 | 1107 | 41.064228 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 843 | 868 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 962 | 974 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 956 | 974 | 2.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 919 | 932 | 2.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1071 | 1093 | 2.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1027 | 1049 | 2.0E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 318 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04700.1 | PB1 domain-containing protein tyrosine kinase. | 0 |
| RefSeq | XP_052137897.1 | serine/threonine-protein kinase STE20-like [Oryza glaberrima] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MP81 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology