Basic Information
Locus ID:
Oco23G008850
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 14458213 | 14463653 | - | Oco23G008850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 74,979.83 Da | 45.62 | 95.33 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 272 | 314 | 6.65768E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 435 | 473 | 7.2E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 477 | 514 | 1.4E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 268 | 338 | 4.2E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 394 | 432 | 9.3E-10 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 363 | 646 | 1.04E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 342 | 1.19E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 504 | 643 | 6.5E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 341 | 3.4E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 354 | 495 | 7.0E-32 | IPR011989 |
| SMART | SM00185 | arm_5 | 393 | 433 | 1.1E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 434 | 474 | 0.0048 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 271 | 334 | 2.5E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 557 | 597 | 450.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 600 | 641 | 450.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 475 | 515 | 3.3 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 404 | 446 | 13.3524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 267 | 341 | 44.416027 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 688 | - | - |
| Coils | Coil | Coil | 140 | 160 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_052138872.1 | protein spotted leaf 11 isoform X1 [Oryza glaberrima] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1BHY0 | RING-type E3 ubiquitin transferase (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002326 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology