Basic Information
Locus ID:
Oco23G008460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 14076737 | 14083471 | + | Oco23G008460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 85,175.25 Da | 52.50 | 71.74 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 497 | 743 | 4.38385E-134 | - |
| CDD | cd00130 | PAS | 128 | 230 | 5.31123E-14 | IPR000014 |
| Pfam | PF00989 | PAS fold | 120 | 229 | 2.7E-13 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 492 | 743 | 1.1E-69 | IPR001245 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 124 | 226 | 1.92E-18 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 461 | 743 | 7.59E-87 | IPR011009 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 130 | 235 | 5.3E-23 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 484 | 568 | 4.7E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 569 | 771 | 1.1E-65 | - |
| SMART | SM00220 | serkin_6 | 491 | 750 | 8.7E-61 | IPR000719 |
| SMART | SM00091 | pas_2 | 119 | 186 | 3.0E-9 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 118 | 233 | 8.2E-14 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 117 | 188 | 17.925755 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 491 | 746 | 44.795605 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 610 | 622 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 651 | 661 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 670 | 692 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 565 | 578 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 604 | 622 | 4.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 714 | 736 | 4.1E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 368 | - | - |
| Coils | Coil | Coil | 736 | 756 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_015620315.1 | probable serine/threonine-protein kinase SIS8 [Oryza sativa Japonica Group] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1BJG1 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002278 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology