Basic Information
Locus ID:
Oco23G008380
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 14000136 | 14003251 | - | Oco23G008380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.72 | 59,355.21 Da | 75.02 | 52.01 | -1.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 496 | 527 | 1.4E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 398 | 480 | 8.2E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 398 | 480 | 7.0E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 128 | - | - |
| Coils | Coil | Coil | 397 | 424 | - | - |
| Coils | Coil | Coil | 432 | 455 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_015620610.1 | serine/arginine repetitive matrix protein 2 isoform X2 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1BIF5 | PAPA-1 domain-containing protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_003963 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology