Basic Information
Locus ID:
Oco23G007180
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
WRKY4
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 12525989 | 12530494 | + | Oco23G007180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 53,793.81 Da | 54.09 | 57.17 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 393 | 450 | 1.8E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 236 | 292 | 4.0E-23 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 384 | 452 | 2.35E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 234 | 294 | 4.97E-25 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 221 | 295 | 5.9E-27 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 376 | 453 | 1.8E-35 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 235 | 293 | 7.7E-34 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 392 | 451 | 1.1E-39 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 387 | 452 | 37.412945 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 236 | 294 | 23.307217 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 365 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_052139297.1 | probable WRKY transcription factor 3 [Oryza glaberrima] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1BK05 | WRKY domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_013724 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology