Basic Information
Locus ID:
Oco23G006640
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 11785446 | 11799630 | + | Oco23G006640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 131,754.22 Da | 43.41 | 77.92 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 62 | 178 | 5.42938E-36 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 203 | 530 | 1.42158E-165 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 892 | 1102 | 7.8E-56 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 630 | 882 | 2.7E-76 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 205 | 526 | 1.5E-46 | IPR001394 |
| Pfam | PF00917 | MATH domain | 67 | 187 | 7.0E-20 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 200 | 556 | 7.65E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 58 | 193 | 6.21E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 690 | 807 | 1.6E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 808 | 905 | 2.1E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 58 | 201 | 2.3E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 202 | 530 | 1.4E-89 | - |
| SMART | SM00061 | math_3 | 62 | 166 | 3.3E-22 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 205 | 529 | 40.475208 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 60 | 185 | 38.724274 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 445 | 462 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 206 | 221 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 60 | - | - |
| Coils | Coil | Coil | 545 | 565 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015620103.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X4 [Oryza sativa Japonica Group] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | Q2QQM3 | ubiquitinyl hydrolase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30540 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology