Basic Information
Locus ID:
Oco23G006040
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 10430109 | 10432573 | - | Oco23G006040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 76,344.34 Da | 46.50 | 91.55 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 492 | 672 | 3.6E-41 | IPR000719 |
| Pfam | PF03924 | CHASE domain | 3 | 140 | 1.5E-24 | IPR006189 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 471 | 673 | 1.15E-58 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 574 | 673 | 1.3E-30 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 477 | 573 | 4.0E-32 | - |
| Gene3D | G3DSA:3.30.450.350 | CHASE domain | 1 | 175 | 5.0E-38 | IPR042240 |
| SMART | SM00220 | serkin_6 | 491 | 670 | 1.7E-10 | IPR000719 |
| SMART | SM01079 | CHASE_2 | 2 | 177 | 6.1E-5 | IPR006189 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 491 | 673 | 33.67215 | IPR000719 |
| ProSiteProfiles | PS50839 | CHASE domain profile. | 1 | 139 | 25.901892 | IPR006189 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 617 | 629 | - | IPR008271 |
| Coils | Coil | Coil | 211 | 231 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_015620760.1 | probable kinase CHARK [Oryza sativa Japonica Group] | 0 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JA05 | CHASE domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2178, AH03.790 |
| Poaceae | Oryza coarctata | 1 | Oco23G006040 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g26940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G114800, gene-BS78_04G115200 |