Basic Information
Locus ID:
Oco23G003140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Histone deacetylase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 2914649 | 2922347 | + | Oco23G003140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 48,115.13 Da | 41.81 | 85.73 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09992 | HDAC_classII | 100 | 407 | 5.09056E-143 | - |
| Pfam | PF00850 | Histone deacetylase domain | 100 | 404 | 1.2E-87 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 84 | 410 | 1.44E-95 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 77 | 441 | 5.2E-106 | IPR037138 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 218 | 241 | 6.3E-14 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 336 | 346 | 6.3E-14 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 252 | 267 | 6.3E-14 | IPR000286 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33470.1 | histone deacetylase 14. Encodes HDA14, a member of the histone deacetylase family proteins. | 0 |
| RefSeq | XP_052137892.1 | histone deacetylase 10, chloroplastic [Oryza glaberrima] | 0 |
| Q2QWU2 | Histone deacetylase 10, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3HS37 | Hist_deacetyl domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17122 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25245 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027115 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13442, Sbi_jg52425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9425 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013426 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33759, Sgl39069 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003261, gene:ENSEOMG00000003822 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0023390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30201370 |
| Apiaceae | Apium graveolens | 1 | Ag7G02189 |
| Arecaceae | Cocos nucifera | 1 | scaffold011718G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720526 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.643.V1.1, AsparagusV1_02.644.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G00371 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G33470.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025266m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g31180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g004610.2N, BniB05g008540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1710 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1773 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g08820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0280s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g09700 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.895 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014209 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27789 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.364, BH05.420, CH05.482 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383950, gene-QOZ80_5BG0430770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0456400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002583, gene-QYE76_071971 |
| Poaceae | Oryza coarctata | 2 | Oco23G003140, Oco24G002720 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g08220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G053900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703353 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G023510, Chr06G025320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G217700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG021100 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G119300.2, TraesCS5B02G121300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb148900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46233 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25579 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.2427 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.861 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1055, nbisL1-mrna-966 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14611 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6530 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.678 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012893 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5143 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19689 |
| Salicaceae | Populus euphratica | 1 | populus_peu13666 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618149 |
| Solanaceae | Solanum chilense | 1 | SOLCI006922200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003959 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11071 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0384 |
| Zosteraceae | Zostera marina | 1 | Zosma05g16310.v3.1 |