Basic Information
Locus ID:
Oco23G003130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 2886695 | 2890835 | - | Oco23G003130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 104,009.71 Da | 31.05 | 109.40 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 186 | 202 | 0.32 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 729 | 959 | 1.1E-18 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 62 | 81 | 2.2E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 446 | 468 | 0.56 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 210 | 269 | 3.6E-12 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 518 | 575 | 6.2E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 961 | 3.03E-37 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 273 | 580 | 2.43E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 65 | 348 | 9.18E-42 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 209 | 302 | 2.6E-24 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 658 | 768 | 1.3E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 770 | 964 | 1.9E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 48 | 208 | 2.3E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 303 | 603 | 6.4E-86 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 538 | 562 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 256 | 280 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 444 | 467 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 210 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 111 | 134 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 468 | 492 | 30.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 689 | 962 | 20.683001 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 234 | 255 | 7.018892 | IPR001611 |
| ProSitePatterns | PS00430 | TonB-dependent receptor proteins signature 1. | 1 | 91 | - | IPR010916 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 538 | 551 | 2.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 305 | 318 | 2.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34420.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_052139230.1 | leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 [Oryza glaberrima] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BKB2 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_010849 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12176, jg12184, jg6496, jg6497, jg6499 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1539 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022651 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g000900, BVRB_1g000910 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10676, Sgl16007 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000014842, gene:ENSEOMG00000033386 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000890, CQ.Regalona.r1.2BG0028100 |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30036320, pistato.v30036330, pistato.v30036350 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G02334 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G011260, COCNU_02G011270, COCNU_15G003240 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701420, gene-LOC103707547, gene-LOC120113031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.652.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G21224 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006707m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29610.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g015210.2N, BniB07g015330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1555 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1690, Cgl03G1691 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.1437, evm.TU.LG06.1443, evm.TU.LG06.1445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021811 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12217 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.358, BH05.416, CH05.474, CH05.729 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383840, gene-QOZ80_5BG0430670 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0346810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002589 |
| Poaceae | Oryza coarctata | 3 | Oco22G003560, Oco22G003570, Oco23G003130 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g09110.1, LOC_Os11g09130.1, LOC_Os12g08180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G052300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104098, Pt_Chr0703351 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G016750, Chr04G023480, Chr06G025290, Chr19G013010 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G218100, Tel5E01G666800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG034170, gene_TRIDC4BG015650 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G101100.1.cds1, TraesCS4D02G097700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb408490_P001, Zm00001eb408500_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25504, nbis-gene-25506, nbis-gene-51111 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17683, Zma_g24840 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1992, evm.TU.LG06.341, evm.TU.LG19.1443 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g18610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1302 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18459, nbisL1-mrna-18511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13472 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13276 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.308 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012031 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18511 |
| Salicaceae | Populus euphratica | 2 | populus_peu16647, populus_peu18940 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627123 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002869 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1302 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2340 |