Basic Information
Locus ID:
Oco23G002440
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 2152217 | 2155360 | + | Oco23G002440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 48,068.53 Da | 44.61 | 79.67 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 68 | 107 | 8.9E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 63 | 137 | 1.1E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 72 | 108 | 4.3E-6 | - |
| SMART | SM00256 | fbox_2 | 73 | 112 | 4.3E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 153 | 286 | 3.7E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 67 | 119 | 11.48455 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_025877945.1 | putative F-box protein At3g52320 [Oryza sativa Japonica Group] | 0 |
| Q9FT50 | Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 | 0 | |
| TrEMBL | A3CF87 | F-box domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_35328 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology