Basic Information
Locus ID:
Oco23G001540
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 1168035 | 1170216 | + | Oco23G001540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 38,317.96 Da | 53.51 | 67.61 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 93 | 120 | 6.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 129 | 1.29E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 157 | 2.4E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 245 | 2.0E-7 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 93 | 132 | 8.963311 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015619132.1 | E3 ubiquitin-protein ligase RING1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A0E0MCC0 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco21G000780, Oco23G001540 |