Basic Information
Locus ID:
Oco23G001250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG23 | 919568 | 925602 | - | Oco23G001250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 64,087.36 Da | 38.73 | 81.18 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 423 | 485 | 1.5719E-23 | IPR002048 |
| CDD | cd00051 | EFh | 350 | 412 | 1.39774E-23 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 422 | 483 | 4.9E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 351 | 410 | 1.3E-12 | IPR002048 |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 302 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 82 | 303 | 1.17E-36 | IPR036322 |
| SUPERFAMILY | SSF47473 | EF-hand | 332 | 485 | 2.35E-53 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 351 | 411 | 2.3E-27 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 350 | 2.8E-76 | IPR015943 |
| Gene3D | G3DSA:1.10.238.10 | - | 412 | 490 | 1.0E-29 | - |
| SMART | SM00320 | WD40_4 | 178 | 212 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 74 | 113 | 3.7 | IPR001680 |
| SMART | SM00054 | efh_1 | 350 | 378 | 1.9E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 459 | 487 | 2.3E-4 | IPR002048 |
| SMART | SM00320 | WD40_4 | 137 | 177 | 0.0041 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 256 | 0.017 | IPR001680 |
| SMART | SM00054 | efh_1 | 423 | 451 | 4.3E-8 | IPR002048 |
| SMART | SM00320 | WD40_4 | 262 | 302 | 3.2E-7 | IPR001680 |
| SMART | SM00054 | efh_1 | 386 | 414 | 5.3E-6 | IPR002048 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 191 | 217 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 455 | 490 | 11.974924 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 419 | 454 | 17.470318 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 346 | 381 | 16.717142 | IPR002048 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 311 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 382 | 417 | 14.569197 | IPR002048 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 304 | 9.783781 | - |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 359 | 371 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 432 | 444 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 468 | 480 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 395 | 407 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19540.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_015619858.1 | glutamate-rich WD repeat-containing protein 1 [Oryza sativa Japonica Group] | 0 |
| Q9ZUN8 | Protein HEAT STRESS TOLERANT DWD 1 OS=Arabidopsis thaliana OX=3702 GN=HTD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MJA8 | WD_REPEATS_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14730, jg3215 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11057 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015368 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg25341, Sbi_jg29451, Sbi_jg3696, Sbi_jg3697, Sbi_jg9193 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19396, Seu_jg6280 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011154 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42909, Sgl47701, Sgl47749 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009399, gene:ENSEOMG00000035333 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014210, CQ.Regalona.r1.8BG0015600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30258160 |
| Apiaceae | Apium graveolens | 1 | Ag10G01456 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000340, scaffold006552G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720882 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1704.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G15028 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G19540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022672m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32920.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g045160.2N, BniB02g015660.2N, BniB03g068870.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0888 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02750 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0734s00001.v1.0, Dusal.1675s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1230 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002642, Pov_00027181 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20577 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.154, AH05.117, BH01.3123, BH04.189, BH05.126, CH01.3356 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0116890, gene-QOZ80_5AG0380300 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0356500.1, HORVU.MOREX.r3.5HG0462210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065197 |
| Poaceae | Oryza coarctata | 4 | Oco21G000480, Oco22G001250, Oco23G001250, Oco24G000620 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g03990.1, LOC_Os12g03822.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G231900, gene-BS78_05G031800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103699, Pt_Chr0103705 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021620, Chr06G023220, Chr16G008960, Chr17G007980 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G203400, Tel5E01G245400, Tel7E01G360200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029960, gene_TRIDC4BG020620 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G187400.1, TraesCS4B02G131200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163470_P003, Zm00001eb354080_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25731, nbis-gene-27017 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18384 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1586, evm.TU.LG22.481 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19720 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1668, evm.TU.Scaffold_2_RagTag.757 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4426 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19859, nbisL1-mrna-8173 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3813, nbisL1-mrna-9475 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1098, evm.TU.utg000016l.611 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005754, Maker00016378 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12699, nbisL1-mrna-5037, nbisL1-mrna-5038 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13641, nbisL1-mrna-5959 |
| Salicaceae | Populus euphratica | 2 | populus_peu13761, populus_peu22920 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617872 |
| Solanaceae | Solanum chilense | 2 | SOLCI000734300, SOLCI002959800 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107018817, gene-LOC107019265, gene-LOC107019516 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6534 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1777 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00190.v3.1, Zosma06g11720.v3.1 |