Basic Information
Locus ID:
Oco22G011660
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 15099875 | 15112168 | - | Oco22G011660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 83,656.14 Da | 38.15 | 88.57 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 339 | 447 | 2.76935E-63 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 73 | 280 | 5.47859E-129 | - |
| Pfam | PF09382 | RQC domain | 516 | 622 | 3.5E-5 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 259 | 3.3E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 340 | 437 | 1.2E-14 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 450 | 509 | 6.9E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 454 | 1.07E-53 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 635 | 709 | 1.2E-9 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 280 | 1.5E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 511 | 7.3E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 514 | 619 | 3.5E-22 | IPR036388 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 2.1E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 357 | 438 | 1.0E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 289 | 2.3E-83 | IPR004589 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 315 | 534 | 9.6E-69 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 634 | 713 | 11.155956 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 22.505442 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 328 | 477 | 19.217899 | IPR001650 |
| Coils | Coil | Coil | 630 | 657 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_052137236.1 | ATP-dependent DNA helicase Q-like 2 isoform X3 [Oryza glaberrima] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | Q2QZ07 | ATP-dependent DNA helicase OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g48090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology