Basic Information
Locus ID:
Oco22G011230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Domain with 2 conserved Trp (W) residues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 14770038 | 14779481 | + | Oco22G011230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 143,514.81 Da | 59.87 | 55.89 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 804 | 933 | 5.22553E-62 | - |
| CDD | cd00201 | WW | 23 | 50 | 5.83962E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 609 | 779 | 2.1E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 816 | 924 | 3.5E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 2.89E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 657 | 940 | 2.39E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 560 | 795 | 9.9E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 796 | 966 | 6.7E-59 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 52 | 7.3E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 604 | 807 | 2.5E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 844 | 924 | 8.1E-33 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 52 | 11.4475 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 819 | 963 | 25.27285 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 585 | 613 | 11.016736 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 616 | 790 | 31.138042 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 50 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 736 | 744 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1127 | 1184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1193 | 1211 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_006663114.1 | DEAD-box ATP-dependent RNA helicase 40-like [Oryza brachyantha] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1C8Y3 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_026763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology