Basic Information
Locus ID:
Oco22G011170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 14721242 | 14726777 | - | Oco22G011170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 148,003.78 Da | 47.13 | 88.62 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 2 | 135 | 4.55869E-15 | IPR038005 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1003 | 1063 | 1.9E-22 | IPR003657 |
| Pfam | PF18052 | Rx N-terminal domain | 7 | 90 | 8.5E-11 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 179 | 420 | 1.1E-41 | IPR002182 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1133 | 1193 | 5.3E-21 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1000 | 1063 | 9.29E-22 | IPR036576 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 165 | 432 | 5.4E-55 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 530 | 822 | 9.42E-22 | - |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1126 | 1194 | 1.02E-19 | IPR036576 |
| Gene3D | G3DSA:1.20.5.4130 | - | 4 | 123 | 7.5E-16 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 418 | 509 | 1.4E-11 | IPR036388 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 1114 | 1187 | 4.1E-22 | IPR036576 |
| Gene3D | G3DSA:3.40.50.300 | - | 157 | 321 | 4.2E-30 | IPR027417 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 989 | 1064 | 6.8E-22 | IPR036576 |
| Gene3D | G3DSA:1.10.8.430 | - | 331 | 417 | 2.6E-12 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 545 | 900 | 9.9E-21 | IPR032675 |
| SMART | SM00774 | WRKY_cls | 1002 | 1064 | 1.4E-36 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 1132 | 1194 | 1.5E-31 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1127 | 1195 | 19.94434 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1003 | 1065 | 18.934328 | IPR003657 |
| PRINTS | PR00364 | Disease resistance protein signature | 197 | 212 | 1.2E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 721 | 737 | 1.2E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 366 | 380 | 1.2E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 269 | 283 | 1.2E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 985 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1278 | 1293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1275 | 1308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1202 | 1228 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46710.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_025877420.1 | disease resistance protein RGA5-like isoform X5 [Oryza sativa Japonica Group] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A679BBN0 | Putative pi-ta protein OS=Oryza sativa subsp. indica OX=39946 GN=K0358C04.5 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology