Basic Information
Locus ID:
Oco22G010950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 14474807 | 14478680 | - | Oco22G010950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 64,609.78 Da | 39.71 | 79.46 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 368 | 501 | 7.44107E-63 | - |
| CDD | cd17920 | DEXHc_RecQ | 170 | 367 | 3.30274E-101 | - |
| Pfam | PF16124 | RecQ zinc-binding | 504 | 572 | 1.6E-12 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 178 | 346 | 5.9E-15 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 386 | 491 | 2.0E-18 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 216 | 512 | 2.48E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 129 | 367 | 1.5E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 368 | 574 | 5.2E-61 | IPR027417 |
| SMART | SM00487 | ultradead3 | 172 | 376 | 1.9E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 410 | 492 | 2.7E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 170 | 574 | 6.4E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 389 | 532 | 19.571438 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 360 | 20.839281 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 299 | 308 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 133 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_040384953.1 | ATP-dependent DNA helicase Q-like 1 [Oryza brachyantha] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1C8W0 | ATP-dependent DNA helicase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_024333 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology