Basic Information
Locus ID:
Oco22G010580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the Casparian strip membrane proteins (CASP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 14067273 | 14067889 | - | Oco22G010580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 17,521.06 Da | 34.79 | 111.55 | 0.58 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006663083.1 | CASP-like protein 1U2 [Oryza brachyantha] | 0 |
| Q2R0D1 | CASP-like protein 1U2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0649700 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0MHQ6 | CASP-like protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH04.1452, CH04.1644, CH04.1646 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_9AG0687300, gene-QOZ80_9AG0687310 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0085320.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061534 |
| Poaceae | Oryza coarctata | 2 | Oco22G010470, Oco22G010580 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g42970.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G132200, gene-BS78_05G154000 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204784, Pt_Ctg00236 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G627200, Tel7E01G992000 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G383800.1.cds1, TraesCS1B02G410400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb113200_P001, Zm00001eb170450_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44288 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18036 |