Basic Information
Locus ID:
Oco22G009820
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 13289422 | 13294098 | - | Oco22G009820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 48,059.33 Da | 43.58 | 67.64 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 289 | 363 | 5.97433E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 169 | 243 | 1.55819E-47 | - |
| CDD | cd12352 | RRM1_TIA1_like | 85 | 155 | 2.34779E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 85 | 151 | 9.0E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 357 | 3.3E-15 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 170 | 240 | 1.4E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 281 | 369 | 1.34E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 82 | 247 | 1.09E-45 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 164 | 4.0E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 269 | 367 | 1.2E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 165 | 267 | 1.4E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 169 | 242 | 4.9E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 290 | 359 | 9.4E-20 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 84 | 153 | 3.5E-18 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 169 | 242 | 0.51 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 290 | 359 | 0.43 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 83 | 157 | 15.800861 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 168 | 246 | 18.052174 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 289 | 363 | 17.284681 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015617424.1 | oligouridylate-binding protein 1B [Oryza sativa Japonica Group] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C514 | Oligouridylate-binding protein 1-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_004905 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology