Basic Information
Locus ID:
Oco22G009650
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 13137703 | 13142336 | - | Oco22G009650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 42,202.77 Da | 50.28 | 93.07 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 349 | 0.1 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 161 | 233 | 5.4E-5 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 92 | 356 | 2.43E-31 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 357 | 4.4E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 178 | 217 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 351 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 175 | 1.3 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_006663044.1 | SEC12-like protein 2 [Oryza brachyantha] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | J3N9K1 | ANAPC4_WD40 domain-containing protein OS=Oryza brachyantha OX=4533 GN=102700096 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology