Basic Information
Locus ID:
Oco22G008420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 11870900 | 11873178 | + | Oco22G008420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 70,424.34 Da | 36.62 | 87.92 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 392 | 641 | 1.8E-31 | IPR000719 |
| Pfam | PF01476 | LysM domain | 207 | 241 | 3.9E-5 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 197 | 242 | 5.49E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 346 | 643 | 2.53E-55 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 349 | 428 | 5.8E-11 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 185 | 250 | 6.0E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 430 | 650 | 5.2E-43 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 197 | 240 | 8.830801 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 129 | 177 | 8.809777 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 313 | 643 | 31.198698 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 267 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006663527.2 | lysM domain receptor-like kinase 4 [Oryza brachyantha] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1C6T3 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology