Basic Information
Locus ID:
Oco22G007540
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 10791486 | 10800887 | + | Oco22G007540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 92,365.60 Da | 38.10 | 86.67 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 94 | 333 | 4.95114E-137 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 539 | 670 | 4.8E-23 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 95 | 237 | 5.7E-51 | IPR000602 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 238 | 357 | 6.1E-14 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 455 | 1.4E-21 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 457 | 810 | 7.85E-78 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 363 | 462 | 4.58E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 83 | 356 | 1.41E-79 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 470 | 539 | 2.6E-10 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 540 | 717 | 4.1E-58 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 338 | 404 | 6.8E-17 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 725 | 824 | 1.2E-19 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 243 | 337 | 5.9E-22 | IPR027291 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 70 | 242 | 1.1E-65 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 405 | 463 | 1.9E-23 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 363 | 437 | 1.2E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_015617007.1 | probable alpha-mannosidase At5g13980 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1C7C1 | Alpha-mannosidase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_021882 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology