Basic Information
Locus ID:
Oco22G007280
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 10336797 | 10342108 | - | Oco22G007280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 65,088.79 Da | 44.56 | 98.50 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 21 | 59 | 2.7E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 79 | 125 | 5.4E-19 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 37 | 543 | 2.04E-32 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 58 | 1.8E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 59 | 592 | 2.4E-163 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 117 | 141 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 142 | 167 | 31.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 383 | 407 | 7.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 327 | 350 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 466 | 380.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 492 | 516 | 150.0 | IPR006553 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_015698141.1 | transport inhibitor response 1-like protein Os11g0515500 [Oryza brachyantha] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1C4E2 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_006750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology