Basic Information
Locus ID:
Oco22G006850
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 9568390 | 9569960 | - | Oco22G006850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 35,340.69 Da | 53.21 | 73.62 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 276 | 317 | 3.4E-6 | IPR002893 |
| Pfam | PF12937 | F-box-like | 34 | 78 | 3.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81901 | HCP-like | 95 | 213 | 2.22E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 275 | 321 | 1.38E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 82 | 3.66E-9 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 260 | 321 | 2.9E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 32 | 81 | 7.7E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 92 | 250 | 2.6E-16 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 275 | 317 | 11.144636 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_040384929.1 | F-box protein At1g67340-like [Oryza brachyantha] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C5N2 | MYND-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012378 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology