Basic Information
Locus ID:
Oco22G006710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cleavage site for pathogenic type III effector avirulence factor Avr
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 9364160 | 9365750 | - | Oco22G006710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.70 | 17,796.58 Da | 66.56 | 36.01 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr | 4 | 34 | 1.5E-4 | IPR008700 |
| Pfam | PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr | 89 | 122 | 7.6E-12 | IPR008700 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 145 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006663447.2 | uncharacterized protein LOC102713861 [Oryza brachyantha] | 0 |
| TrEMBL | A0A6G1CAG8 | AvrRpt-cleavage domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_026315 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH04.1222, CH04.1416 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0680700 |
| Poaceae | Oryza coarctata | 3 | Oco21G005600, Oco21G005660, Oco22G006710 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g29210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G127800 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr31G004820 |
| Poaceae | Zea mays | 1 | Zm00001eb169750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38581 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18814 |