Basic Information
Locus ID:
Oco22G006480
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 9052400 | 9060738 | + | Oco22G006480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 115,096.19 Da | 53.73 | 81.10 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 832 | 987 | 4.02333E-62 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 590 | 730 | 6.3E-9 | IPR029346 |
| Pfam | PF06337 | DUSP domain | 141 | 235 | 2.9E-19 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 416 | 986 | 3.8E-86 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 414 | 989 | 9.61E-110 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 141 | 235 | 1.44E-19 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 248 | 333 | 1.1E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 729 | 995 | 4.7E-58 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 133 | 247 | 1.4E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 400 | 639 | 9.5E-67 | - |
| SMART | SM00695 | dusp | 126 | 237 | 3.3E-19 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 108 | 234 | 13.871643 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 416 | 989 | 56.983639 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 417 | 432 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 931 | 948 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_006663437.2 | ubiquitin carboxyl-terminal hydrolase 5, partial [Oryza brachyantha] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1C9H8 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033943 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology