Basic Information
Locus ID:
Oco22G006320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 8709712 | 8712551 | + | Oco22G006320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 56,521.29 Da | 52.38 | 90.39 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 109 | 447 | 5.6E-53 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 348 | 418 | 2.75E-14 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 109 | 453 | 3.16E-47 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 347 | 418 | 8.7E-79 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 123 | 448 | 8.7E-79 | - |
| SMART | SM00636 | 2g34 | 106 | 447 | 3.7E-57 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 106 | 464 | 49.617134 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_006662929.3 | nod factor hydrolase protein 1-like [Oryza brachyantha] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1C9U9 | GH18 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_031289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology