Basic Information
Locus ID:
Oco22G006180
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 8268369 | 8276319 | + | Oco22G006180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 98,884.49 Da | 28.55 | 90.38 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 589 | 861 | 3.51533E-86 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 191 | 212 | 1.1 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 585 | 856 | 6.7E-52 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 332 | 365 | 0.065 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 49 | 64 | 0.83 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 372 | 428 | 4.8E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 56 | 436 | 3.23E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 564 | 858 | 1.69E-79 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 313 | 1.0E-69 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 329 | 449 | 3.1E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 660 | 882 | 1.4E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 543 | 659 | 6.2E-34 | - |
| SMART | SM00369 | LRR_typ_2 | 415 | 437 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 391 | 414 | 0.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 116 | 139 | 3.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 213 | 15.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 583 | 866 | 7.4E-48 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 583 | 862 | 41.445847 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 707 | 719 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 589 | 610 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 394 | 407 | 5.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 415 | 428 | 5.6E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 473 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006663422.2 | receptor-like kinase TMK4 [Oryza brachyantha] | 0 |
| Q2R560 | Receptor protein kinase WSS1 OS=Oryza sativa subsp. japonica OX=39947 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MF69 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH04.1153, CH04.1339 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0351990, gene-QOZ80_9AG0681760 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0374020.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067050 |
| Poaceae | Oryza coarctata | 2 | Oco21G005150, Oco22G006180 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g41430.1, LOC_Os11g26130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G135600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G021660, Chr07G018000, Chr31G004400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G266400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG023700, gene_TRIDC4BG025710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G147700.1, TraesCS4B02G165600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb112700_P001, Zm00001eb169350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38701 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18762 |