Basic Information
Locus ID:
Oco22G005940
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 7707953 | 7708858 | + | Oco22G005940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 33,540.93 Da | 45.72 | 77.41 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 30 | 152 | 7.52611E-21 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 182 | 296 | 1.6E-20 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 169 | 296 | 6.28E-24 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 26 | 156 | 1.8E-27 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 160 | 300 | 1.2E-30 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 27 | 155 | 7.4E-23 | IPR008974 |
| SMART | SM00225 | BTB_4 | 190 | 298 | 1.3E-14 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 190 | 259 | 15.100905 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 28 | 152 | 12.796801 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.5 | - | 0 |
| RefSeq | XP_040384463.1 | BTB/POZ and MATH domain-containing protein 1-like [Oryza brachyantha] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C5P3 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_013582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 1 | Oco22G005940 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g24550.1 |