Basic Information
Locus ID:
Oco22G005540
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 6435656 | 6440177 | - | Oco22G005540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 100,567.88 Da | 44.30 | 61.89 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 99 | 185 | 1.95861E-30 | - |
| Pfam | PF00855 | PWWP domain | 99 | 185 | 4.9E-12 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 95 | 210 | 8.42E-23 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 848 | 891 | 7.33E-5 | IPR035979 |
| Gene3D | G3DSA:2.30.30.140 | - | 89 | 193 | 1.3E-18 | - |
| SMART | SM00293 | PWWP_4 | 99 | 160 | 0.0022 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 101 | 162 | 12.536978 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 809 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_040384843.1 | uncharacterized protein LOC121055765 [Oryza brachyantha] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C706 | PWWP domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology