Basic Information
Locus ID:
Oco22G005490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 6382575 | 6388110 | - | Oco22G005490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 47,030.42 Da | 51.20 | 95.03 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 73 | 337 | 6.6E-116 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 74 | 336 | 3.83E-54 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 338 | 392 | 5.62E-7 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 100 | 393 | 2.0E-106 | IPR027417 |
| SMART | SM00382 | AAA_5 | 123 | 297 | 3.3E-5 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 70 | 391 | 1.8E-129 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 101 | 260 | 38.780624 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 270 | 341 | 23.848846 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 282 | 290 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 365 | 382 | 6.3E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 312 | 341 | 6.3E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 231 | 260 | 6.3E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 279 | 307 | 6.3E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 193 | 222 | 6.3E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 159 | 188 | 6.3E-73 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 70 | 397 | 41.625656 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 431 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_015615298.1 | uncharacterized protein LOC4350329 [Oryza sativa Japonica Group] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0J132 | DNA repair protein recA homolog 3, mitochondrial OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology