Basic Information
Locus ID:
Oco22G004630
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 4928553 | 4930794 | - | Oco22G004630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 41,015.96 Da | 44.43 | 72.45 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 55 | 6.5E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 178 | 224 | 3.1E-11 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 135 | 176 | 2.6E-4 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 108 | 370 | 4.84E-43 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 62 | 1.44E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 40 | 281 | 1.6E-31 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 282 | 382 | 7.3E-6 | IPR015915 |
| SMART | SM00612 | kelc_smart | 141 | 189 | 3.7E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 190 | 239 | 2.9E-5 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_040384985.1 | F-box/kelch-repeat protein At2g44130-like [Oryza brachyantha] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8J5WLU0 | F-box domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0011g28852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology