Basic Information
Locus ID:
Oco22G003930
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 3749904 | 3758078 | - | Oco22G003930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 75,977.72 Da | 34.29 | 82.81 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 411 | 635 | 2.60745E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 532 | 572 | 1.5E-6 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 18 | 299 | 3.5E-50 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 577 | 614 | 2.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 376 | 652 | 1.56E-47 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 310 | 9.04E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 111 | 315 | 1.6E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 90 | 7.9E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 371 | 657 | 1.0E-71 | IPR015943 |
| SMART | SM00320 | WD40_4 | 575 | 614 | 1.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 484 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 441 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 528 | 380.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 18 | 301 | 3.7E-39 | IPR000719 |
| SMART | SM00320 | WD40_4 | 531 | 572 | 2.6E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 484 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 538 | 581 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 538 | 572 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 582 | 614 | 10.495596 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 307 | 38.435307 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 582 | 614 | 12.613797 | IPR001680 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 46 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 154 | 166 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 368 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_052135855.1 | uncharacterized protein LOC127754387 isoform X2 [Oryza glaberrima] | 0 |
| Q8GYA4 | Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3 | 0 | |
| TrEMBL | E0CW94 | Protein kinase-3 OS=Oryza coarctata OX=77588 GN=OC_Ba133A18.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology