Basic Information
Locus ID:
Oco22G001950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 1448775 | 1459295 | + | Oco22G001950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 17,628.85 Da | 58.97 | 67.06 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 108 | 152 | 8.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 156 | 2.45E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 157 | 1.8E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 152 | 8.919052 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55530.3 | - | 0 |
| RefSeq | XP_040384700.1 | E3 ubiquitin-protein ligase RING1-like [Oryza brachyantha] | 0 |
| Q9C1X4 | Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1 | 0 | |
| TrEMBL | A0A6G1C8Q2 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_024386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13038 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9036 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003020, gene-QYE76_003021, gene-QYE76_003134 ... |
| Poaceae | Oryza coarctata | 1 | Oco22G001950 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g05200.1, LOC_Os11g05230.1, LOC_Os12g05280.1 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0703130, Pt_Chr0703132, Pt_Chr0703180 |
| Poaceae | Zea mays | 4 | Zm00001eb196720_P001, Zm00001eb196750_P001 ... |