Basic Information
Locus ID:
Oco22G000160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBA1
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG22 | 129131 | 136660 | - | Oco22G000160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 116,642.44 Da | 33.56 | 84.41 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01490 | Ube1_repeat2 | 461 | 1000 | 0.0 | - |
| CDD | cd01491 | Ube1_repeat1 | 44 | 429 | 4.99648E-154 | - |
| Pfam | PF00899 | ThiF family | 442 | 942 | 3.6E-76 | IPR000594 |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 219 | 289 | 1.0E-28 | IPR032418 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 291 | 360 | 9.7E-22 | IPR032420 |
| Pfam | PF00899 | ThiF family | 46 | 421 | 7.9E-29 | IPR000594 |
| Pfam | PF09358 | Ubiquitin fold domain | 953 | 1042 | 7.9E-26 | IPR018965 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 629 | 882 | 2.8E-83 | IPR019572 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 436 | 937 | 9.03E-130 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 39 | 426 | 1.44E-101 | IPR035985 |
| Gene3D | G3DSA:3.40.50.720 | - | 462 | 940 | 1.9E-192 | - |
| Gene3D | G3DSA:1.10.10.2660 | - | 614 | 889 | 1.9E-192 | IPR042063 |
| Gene3D | G3DSA:2.40.30.180 | - | 207 | 288 | 3.4E-110 | IPR042302 |
| Gene3D | G3DSA:3.50.50.80 | - | 36 | 153 | 4.9E-37 | IPR042449 |
| Gene3D | G3DSA:3.10.290.60 | - | 955 | 1045 | 1.2E-23 | IPR038252 |
| Gene3D | G3DSA:3.40.50.12550 | - | 164 | 452 | 3.4E-110 | - |
| SMART | SM00985 | UBA_e1_C_a_2 | 920 | 1042 | 2.1E-53 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 39 | 1047 | 0.0 | IPR018075 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 404 | 412 | - | IPR018074 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 621 | 629 | - | IPR033127 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 66 | 90 | 5.2E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 690 | 717 | 5.2E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 181 | 208 | 5.2E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 489 | 512 | 5.2E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 536 | 561 | 5.2E-66 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30110.1 | ubiquitin-activating enzyme 1. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. | 0 |
| RefSeq | XP_040385203.1 | ubiquitin-activating enzyme E1 2 [Oryza brachyantha] | 0 |
| P31251 | Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum OX=4565 GN=UBA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BQ41 | E1 ubiquitin-activating enzyme OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033857 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology